robertsmac:FastQC sr320$ ./fastqc /Users/sr320/Desktop/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22\ trimmed.fastq -O /Volumes/Bay3/Software/FastQC/output

Started analysis of solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22 trimmed.fastq

Approx 5% complete for solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22 trimmed.fastq

Approx 10% complete for solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22 trimmed.fastq

Approx 15% complete for solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22 trimmed.fastq

Approx 20% complete for solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22 trimmed.fastq

Approx 25% complete for solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_QV_RE22 trimmed.fastq

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Duplicates removed and uploading

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Ideas 

take Pinto Ab Ilumina files and see if we can process

Step 1 - Illumina